Joye SB, Connell T.M., Miller L.G., Oremland R.S..  1999.  Oxidation of ammonia and methane in an alkaline, saline lake. Limnology & Oceanography. 44(1):178-188.
Mayer L.M., Keil R.G., Macko S.A., Joye SB, Ruttenberg K.C., Aller R.C.  1998.  The importance of suspended particulates in riverine delivery of bioavailable nitrogen to coastal zones. Global Biogeochemical Cycles. 12:573-580.
Sassen R., MacDonald I.R., Guinasso N.L., Joye SB, Requejo A.G., Sweet S.T., Alcala-Herrera J., DeFrietas D.A., Schink D.R..  1998.  Bacterial methane oxidation in sea-floor gas hydrate: Significance to life in extreme environments. Geology. 26:851-854.
Lee R., Joye SB, Valiala I..  1997.  Release of N2 and N2O from salt marsh sediments subject to different land-derived N loads. The Biological Bulletin. 193:292-293.
Connell T., Joye SB, Miller L.G., Oremland R.S..  1997.  Bacterial oxidation of methyl bromide in Mono Lake, California. Environmental Science and Technology. 31:1489-1495.
Joye SB, Mozzotta M.L., Hollibaugh J.T..  1996.  Community metabolism in intertidal microbial mats: the importance of iron and manganese reduction. Estuarine Coastal and Shelf Science. 43:747-766.
Joye SB, Smith S.V., Hollibaugh J.T., Paerl H.W..  1996.  Estimating denitrification in estuarine sediments: comparisons of stoichiometric and acetylene based methods. Biogeochemistry. 33:197-766.
Currin C.A., Joye SB, Paerl H.W..  1996.  Nitrogen fixation and denitrification in a transplanted Spartina marsh: Implications for nitrogen budgets. Estuarine Coastal and Shelf Science. 42:597-616.
Yager PL, Wallace DWR, Johnson KM, Smith WO, Minnett PJ, Deming JW.  1995.  The Northeast Water Polynya as an atmospheric CO 2 sink: A seasonal rectification hypothesis. Journal of Geophysical Research. 100(C3):4389.