Meile C, Tuncay K, Van Cappellen P.  2003.  Explicit representation of spatial heterogeneity in reactive transport models: application to bioirrigated sediments. Journal of Geochemical Exploration. 78:231–234.
Sun M.Y., Cai W.J., Joye SB, Ding H., Dai J., Hollibaugh J.T..  2002.  Degradation of algal lipids in microcosm sediments with different mixing regimes. Organic Geochemistry. 33:445-159.
Moore W.S., Krest J., Taylor G., Roggenstein E., Joye SB, Lee R.Y..  2002.  Thermal evidence of water exchange through a coastal aquifer: Implications for nutrient fluxes. Geophysical Research Letters. 10:1029/2002GL014923.
Koretsky CM, Meile C, Van Cappellen P.  2002.  Quantifying bioirrigation using ecological parameters: a stochastic approach. Geochem. Trans. 3:17–30.
Meile C, Koretsky CM, Van Cappellen P.  2001.  Quantifying bioirrigation in aquatic sediments: an inverse modeling approach. Limnology and Oceanography. 46:164–177.
Bowles M.W., Samarkin V.A., Joye SB.  2001.  Improved measurement of microbial activity in deep-sea sediments at in situ pressure and methane concentration. Limnology and Oceanography: Methods. 9:499-506.
Fisher C.R., MacDonald I.R., Sassen R., Young C.M., Macko S.A., Hourdez S., Carney R.S., Joye SB, McMullin E..  2000.  Methane ice worms: Hesiocaeca methanicola colonizing fossil fuel reserves. Naturwissenschaften. 87(4):184-187.
Ward B.B., Martino D., Diaz C., Joye SB.  2000.  Analysis of ammonia-oxidizing bacteria from hypersaline Mono Lake, California on the basis of 16S rRNA sequences. Applied and Environmental Microbiology. 66(7):2873-2881.