Hollibaugh J.T., Carini S., Jellison R., Joye SB, LeCleir G., Meile C., Vasquez L., Gürleyük H., Wallschläger D..  2005.  Distribution of arsenic species in an alkaline, hypersaline, meromictic lake in response to the seasonal stratification. Geochimica et Cosmochimica Acta. 69(8):1925-1937.
Lin J.L., Joye SB, Schafer H., Scholten C.M., McDonald I., Murrell J.C..  2005.  Analysis of methane monooxygenase genes in Mono Lake suggests that increased methane oxidation activity may correlate with a change in methanotroph community structure. Applied and Environmental Microbiology. 71:6458-6462.
Carini SA, LeCleir G., Bano N., Joye SB.  2005.  Activity, abundance and diversity of aerobic methanotrophs in an alkaline, hypersaline lake (Mono Lake, CA, USA). Environmental Microbiology. 7(8):1127-1937.
Kalanetr K.M., Joye SB, Sunseri N.R., Nelson D.C..  2005.  Novel, large, vacuolate, nitrate-accumulating sulfur bacteria discovered in the Gulf of Mexico reproduce by reductive division in three dimensions. Environmental Microbiology. 7(9):1451-1460.
Magalhães C.M., Joye SB, Moreira R.M., Wiebe W.J., Bordalo A.A..  2005.  Salinity and inorganic nitrogen effects on nitrification and denitrification rates in intertidal sediments and rocky biofilms: Douro River estuary, Portugal. Water Research. 39(9):1783-1794.
Orcutt B.N., Samarkin V., Boetius A., Elvert M., Joye SB.  2005.  Molecular biogeochemistry of sulfate reduction, methanogenesis and the anaerobic oxidation of methane at Gulf of Mexico methane seeps. Geochimica et Cosmochimica Acta. 69:4267-4281.
Joye SB, Boetius A., Orcutt B.N., Montoya J.P., Schulz H.N., Erickson M., Lugo S.K..  2004.  The anaerobic oxidation of methane and sulfate reduction in sediments from Gulf of Mexico cold seeps. Chemical Geology. 205(3/4):219-238.
Orcutt B.N., Boetius A., Lugo S.K., MacDonald I.R., Samarkin V., Joye SB.  2004.  Life at the edge of methane ice: methane and sulfur cycling in Gulf of Mexico gas hydrates. Chemical Geology. 205(3/4):219-251.
Arvidson R.L., Morse J.W., Joye SB.  2004.  The Sedimentary Biogeochemistry of Chemosynthetic Cold Seep Communities, Gulf of Mexico, USA. Marine Chemistry. 87:97-119.

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