Meile C, Tuncay K.  2006.  Scale dependence of reaction rates in porous media. Advances in water resources. 29:62–71.
Moore W.S., Blanton J., Joye SB.  2006.  Estimates of flushing times, submarine groundwater discharge, and nutrient fluxes to Okatee Estuary, South Carolina. Journal of Geophysical Research. 111:No.C9,C09006,10.1029/2005JC003041.
Smith V., Joye SB, Howarth R.W..  2006.  Eutrophication in aquatic ecosystems. Eutrophication in aquatic ecosystems. 51(2):351-355.
Weston N.B., Joye SB.  2006.  Microbial and geochemical ramifications of salinity intrusion into tidal freshwater sediments. Journal of Geophysical Research: Biogeosciences. 111:G1:G01009,10.1029/2005JG00007.
Castelao RM, Barth JA, Mavor TP.  2005.  Flow-topography interactions in the northern California Current System observed from geostationary satellite data. Geophysical Research Letters. 32(24)
Barth J.A.  2005.  Time-dependent, wind-driven flow over a shallow midshelf submarine bank. Journal of Geophysical Research. 110(C10)
Magalhães C.M., Joye SB, Moreira R.M., Wiebe W.J., Bordalo A.A..  2005.  Salinity and inorganic nitrogen effects on nitrification and denitrification rates in intertidal sediments and rocky biofilms: Douro River estuary, Portugal. Water Research. 39(9):1783-1794.
Orcutt B.N., Samarkin V., Boetius A., Elvert M., Joye SB.  2005.  Molecular biogeochemistry of sulfate reduction, methanogenesis and the anaerobic oxidation of methane at Gulf of Mexico methane seeps. Geochimica et Cosmochimica Acta. 69:4267-4281.