Roberts H.H., Feng D., Joye SB.  2010.  Cold seep carbonates of the middle and lower continental slope, northern Gulf of Mexico. Deep Sea Research. 10:doi:10.1016/j.dsr2.2010.09.003.
Wilson A., Moore W.S., Joye SB, Anderson J., Schutte C..  2010.  Storm-driven groundwater flow in a salt marsh. Water Resources Research. 10:doi:10.1029/2010WR009496.
Tavormina P.L., Ussler W., Joye SB, Giovannoni S., Orphan V.J..  2010.  Intergenic spacer length of particulate methane monooxygenases reveals distributions of microbial methane oxidizers in the mesopelagic ocean. The ISME Journal. :doi:10.1038/ismej.2009.155.
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messie M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee J-H et al..  2010.  Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 107:14679-14684.
Porubsky W.P, Joye SB, Moore W.S., Tuncay K., Meile C..  2010.  Hammock groundwater flow and biogeochemistry: Field measurements, laboratory assays and predictive modeling. Biogeochemistry. 10:DOI:10.1007/s10533-010-9484-8.
.R.Diercks A, Highsmith R.C., Asper V.L., Joung D., Guo L., Zhou Z., Shiller A.M., Joye SB, Teske A.P., Lohrenz S.E..  2010.  Characterization of subsurface polycyclic aromatic hydrocarbons at the Deepwater Horizon site. Geophysical Research Letters. 37:doi:10.1029/2010GL045046.
Spencer RGM, Stubbins A, Hernes PJ, Baker A, Mopper K, Aufdenkampe AK, Dyda RY, Mwamba VL, Mangangu AM, Wabakanghanzi JN et al..  2009.  Photochemical degradation of dissolved organic matter and dissolved lignin phenols from the Congo River. Journal of Geophysical Research. 114(G3)
Burd AB, Jackson GA.  2009.  Particle Aggregation. Annual Review of Marine Science. 1(1):65-90.
Boetius A., Joye SB.  2009.  Thriving in Salt: Life in hypersaline habitats. Science. 324
Joye SB, Samarkin V.A, Orcutt B.N., MacDonald I.R., Hinrichs K.-U., Elvert M., Teske A.P., Lloyd K.G., Lever M.A., Montoya J.P. et al..  2009.  Surprising metabolic variability in seafloor brines revealed by carbon and sulfur cycling. Nature Geoscience. 2:349-354.

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