Shah S.R., Joye SB, Brandes J., McNichol A.P..  2013.  Carbon isotopic evidence for microbial control of carbon supply to Orca Basin, Gulf of Mexico. . Biogeosciences. 10:3175-3183.
Baas P, Hester M.W., Joye SB.  2013.  Benthic primary production and nitrogen cycling in Spartina alterniflora marshes impacted by acute dieback. Biogeochemistry. :DOI10.1007/s10533-013-9897-2.
Segarra K.E.A., Comerford C., Slaughter J., Joye SB.  2013.  Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and marine sediments. Geochimica et Cosmochimica Acta. 115:15-30.
Dekas AE, Chadwick G., Connon S., Bowles M., Joye SB, Orphan V.J..  2013.  Investigating methane seep nitrogen fixation at Mound 12, Costa Rica: Spatial distribution of diazotrophy and significance of the ANME archaea. Environmental Microbiology. 10:DOI10.1007/s10533-013-9897-2.
Osburn CL, Stedmon CA, Spencer RGM, Stubbins A.  2013.  Emerging Issues Workshop Report: Linking optical and chemical properties of dissolved organic matter in natural waters. Limnology and Oceanography Bulletin. (22):78-82.
Peterson R.N., Viso R.F., MacDonald I.R., Joye SB.  2013.  On the utility of radium isotopes as tracers of seafloor hydrocarbon discharge. Marine Chemistry. 10:
Spencer RGM, Gaillardet J, Stubbins A.  2013.  Geochemistry of the Congo River, Estuary and Plume. Biogeochemical Dynamics at Major River-Coastal Interfaces: Linkages with Global Change. :554-583.
Camilli R., Di Iorio D., Bowen A., Reddy C.M, Techet A.H, Yoerger D.R, Whitcomb L.L, Seewald J.S, Sylva S.P, Fenwick J..  2012.  Acoustic measurement of the Deepwater Horizon Macondo well flow rate. Proceedings of the National Academy of Sciences. 109(50):20235-20239.
Ghiglione J.-F., Galand P.E, Pommier T., Pedros-Alio C., Maas E.W, Bakker K., Bertilson S., Kirchman D.L, Lovejoy C., Yager P.L et al..  2012.  Pole-to-pole biogeography of surface and deep marine bacterial communities. Proceedings of the National Academy of Sciences. 109(43):17633-17638.
Alonso-Saez L., Waller A.S, Mende D.R, Bakker K., Farnelid H., Yager P.L, Lovejoy C., Tremblay J.-E., Potvin M., Heinrich F. et al..  2012.  Role for urea in nitrification by polar marine Archaea. Proceedings of the National Academy of Sciences. 109(44):17989-17994.